Publications

Microarrays

  • Studying the Functional Genomics of Stress Responses in Loblolly Pine using the Expresso Microarray Management System, Lenwood S. Heath, Naren Ramakrishnan, Ronald R. Sederoff, Ross W. Whetten, Boris I. Chevone, Craig A. Struble, Vincent Y. Jouenne, Dawei Chen, Leonel Merwe van Zyl, and Ruth Grene, Comparative and Functional Genomics 3, (2002), 226-243.
  • Identifying Biological Processes in Microarray Data Using Singular Value Decompostion and the Gene Ontology Database, Peigang Li, Craig A. Struble, Chin-Fu Chen, Proceedings of the Seventh World Multiconference on Systemics, Cybernetics, and Informatics, (2003), 7:339-344.
  • Spatial Dependence of Hybridization in the cDNA Microarray, Stephen J. Merrill, Sangeeta Nelson, Craig A. Struble, Canadian Applied Mathematics Quarterly (2003) 11(4):321-337.
  • Molecular targets of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) within the zebrafish ovary: Insights into TCDD-induced endocrine disruption and reproductive toxicity, Tisha C. King Heiden, Craig A. Struble, Matthew L. Rise, Martin J. Hessner, Reinhold J. Hutz and Michael J. Carvan III, Reproductive Toxicology (2007), in press

Text Mining

  • Clustering MeSH Representations of Biomedical Literature, Craig A. Struble, Chitti Dharmanolla, Proceedings of BioLINK 2004 (2004) 41-48.
  • Combined Conditional Random Fields and n-gram Language models for Gene Mention Recognition, Craig A. Struble, Richard J. Povinelli, Michael T. Johnson, Dina Berchanskiy, Jidong Tao, and Marek Trawicki, Proceedings of the Second BioCreative Challenge Evaluation Workshop (2007) 81-83.

Proteomics

  • Multiple approaches to data-mining of proteomic data based on statistical and pattern classification methods, Jacob W. Tatay, Xin Feng, Nancy Sobczak , Hao Jiang, Chin-Fu Chen, Roumyana Kirova, Craig Struble, Nan Jiang Wang, Peter J. Tonellato, Proteomics 3 (2003) 9:1704-1709.
  • Synergistic Use of Compound Properties and Docking Scores in Neural Network Modeling of CYP2D6 Binding: Predicting Affinity and Conformational Sampling, Peter S. Bazeley, Sridevi Prithivi, Craig A. Struble, Richard J. Povinelli and Daniel S. Sem, J. Chem. Inf. Model (2006) 2698-2708.

Haplotype Analysis

  • Analysis of Concordance of Different Haplotype Block Partitioning Algorithms, Amit R. Indap, Gabor T. Marth, Craig A. Struble, Peter Tonellato and Michael Olivier, BMC Bioinformatics (2005) 6:303.